Sourdough Mac and Cheese

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Use sourdough in two different ways to make this homemade Sourdough Mac and Cheese!

The recipe uses sourdough discard as a thickener in the béchamel sauce or roux, and the cheesy, baked noodles are topped with crunchy sourdough breadcrumbs.

This easy Sourdough Mac and Cheese is baked in a 9×13″ baking dish, so it makes a great main dish for dinner or as a side dish for Thanksgiving or other large meals. Plus, it all comes together in only 3 easy steps!

👉 For other cheesy ways to use sourdough, see my recipes for a perfect Sourdough Grilled Cheese, Sourdough Cheddar Biscuits, and Sourdough Discard Cheese Crackers (like Cheez-Its!).

Spoon scooping cheesy sourdough mac and cheese from baking dish with sourdough breadcrumbs.

⭐️ Why You’ll Love this Recipe

  • Easy weeknight dinner or side dish recipe in only 3 easy steps.
  • Classic macaroni and cheese with no fancy ingredients or never-heard-of cheeses. I just use cheddar and gruyère or fontina!
  • Sourdough discard is an excellent, tangy thickener in the cheesy sauce, just like in my unique Sourdough Frosting recipe.
  • Topped with sourdough breadcrumbs that you can make with leftover or stale sourdough bread.
  • The recipe is flexible enough to add other inclusions, flavors, or use different pasta shapes.
  • Stores well for days in the refrigerator.
Plate of sourdough mac and cheese with sourdough breadcrumbs with a fork on a towel.

🔍 Tips for Making Sourdough Mac and Cheese

  • Grate or shred your own cheese
    • For the best flavor, grate or shred your own cheeses. Pre-shredded cheese may contain anti-clumping agents and other additives that affect its flavor, texture, and melting properties.
  • Use high-quality cheese
    • Don’t skimp on using the best cheese you can get for this mac and cheese. It actually tastes cheesy, and that’s the prominent flavor!
  • Cook pasta just al dente
    • The pasta will keep cooking some in the oven.
  • Whisk the sourdough discard and sauce constantly to prevent burning.
  • Cook only until the mac and cheese is bubbly and the breadcrumbs are browned.
Large spoon in a baking dish of baked sourdough mac and cheese with sourdough breadcrumbs.

🛠 Tools Needed

You only need a few basic tools to make sourdough mac and cheese.


🛒 Ingredients Needed

See below for my ingredient recommendations and possible substitutions.

Labeled ingredients needed for sourdough mac and cheese including unsalted butter, pasta, gruyere cheese, cheddar cheese, whole milk, salt and pepper, sourdough discard, and sourdough breadcrumbs.
  • Pasta
    • You can use classic macaroni noodles, but I prefer shells.
    • If you want to make it extra sourdough, you could use sourdough pasta noodles!
  • Salt, for salting the pasta water and the sauce.
  • Pepper, to taste
    • You can add other flavors like paprika, mustard, nutmeg, or other macaroni favorite spices when you make the sauce.
  • Unsalted butter, enriches the flavor and prevents the noodles from sticking to each other.
  • Sourdough discard
  • Cheeses: Cheddar and Gruyere or Fontina
    • The prominent flavor in this recipe is cheese, so use high-quality cheese.
    • Cheddar is a classic for macaroni and delivers the perfect balance of sharpness and an orange color.
    • Gruyere or Fontina adds nuttiness and creaminess since they both melt well. Mozzarella, Monterey Jack, Gouda, or Parmesan would be other good inclusions or substitutes.
    • If you want to use other cheeses, go for it. But I try to keep things simple when it comes to mac and cheese.
  • Whole milk, for making the sauce.
  • Sourdough breadcrumbs

👨‍🍳 How to Make Sourdough Mac and Cheese

Follow this visual, detailed recipe guide as you make sourdough mac and cheese in 3 easy steps.

I adapted this classic baked mac and cheese recipe for sourdough from NYT Cooking.

1. Cook the Pasta

Preheat the oven to 425ºF (218ºC) and butter a 9×13″ baking dish to help prevent sticking.

Boil a large pot of salted water, then cook the pasta to 1 minute less than al dente, according to your package instructions.

The pasta will continue cooking during baking.

Drain and set the pasta aside.

Meanwhile, grate the cheeses with a box grater or using a food processor and set the cheese aside.

2. Make the Béchamel Sauce

In a large skillet (or the same pot you used to cook the pasta), melt the butter.

Then, add the sourdough discard and whisk constantly for a few minutes until it thickens and the discard smells toasty and clumps form like a roux.

Slowly pour in the whole milk while whisking, season with salt and pepper, and bring the milk to a simmer for a few minutes until no clumps of discard remain and the mixture thickens slightly.

Remove the pan from the heat and whisk in the cheeses until completely melted, forming a cheesy sauce.

3. Bake

Add the cooked pasta to the cheese sauce and stir until completely coated.

Pour the pasta and cheese into the buttered 9×13″ baking dish and top with a layer of sourdough breadcrumbs.

Bake on a baking sheet for 25-28 minutes, or until the breadcrumbs are dark brown and crispy and the cheese sauce is bubbly.

Cool for 5-10 minutes before serving so the cheese sauce can set.

Note: If you don’t have homemade sourdough breadcrumbs, use store-bought breadcrumbs or Panko.

Feel free to add melted butter, parmesan, or other flavors and spices to the breadcrumbs if you like.


How to Store and Serve

Sourdough mac and cheese can be made ahead, covered with aluminum foil, and refrigerated for 3-5 days. Simply reheat before serving.

If you plan to freeze the mac and cheese, I suggest leaving the breadcrumb topping off, as it can get soggy over time. Freeze baked portions in airtight containers for up to 3 months, thaw overnight in the refrigerator, and reheat.

When reheating baked mac and cheese, adding a splash of milk can help loosen the sauce.

The sourdough mac and cheese is an excellent side dish for holidays, or as a main weeknight, kid-friendly meal.

Plate of sourdough mac and cheese with a fork on a striped towel.

❓ FAQs

Why is my mac and cheese dry?

You may have overbaked it. Add a splash of milk to the sauce when you reheat.

Can you make gluten-free sourdough mac and cheese?

Yes, use gluten-free pasta, gluten-free sourdough discard, and gluten-free sourdough breadcrumbs.

Can I halve the recipe?

Yes, halve all the ingredients and bake in an 8×8″ pan.

How many servings does this sourdough mac and cheese make?

Baked in a 9×13″ pan, this recipe makes 8-10 large servings as a main or 10-15 smaller servings as a side dish.

Did you make this recipe?
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Please leave a rating, comment or question below! Tag me on Instagram or Facebook @SourdoughBrandon or PIN this recipe on Pinterest to come back to it later!

Spoon scooping cheesy sourdough mac and cheese from baking dish with sourdough breadcrumbs.
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Sourdough Mac and Cheese

This easy homemade Sourdough Mac and Cheese uses sourdough in two ways and topped with sourdough breadcrumbs. It's cheesy and makes a great dinner side or main dish.
Prep Time20 minutes
Cook Time25 minutes
Total Time45 minutes
Yield or Serving: 12

Equipment

Ingredients

  • 1 lb Pasta, Elbow, shells, macaroni, or other shapes
  • 12 oz Cheddar Cheese, freshly grated
  • 12 oz Gruyère, freshly grated, or Fontina
  • 4 TBS Unsalted Butter
  • 120 g Sourdough Discard, ½ cup
  • 4 cups Whole Milk
  • 2 tsp Kosher Salt
  • 1 tsp Black Pepper, to taste
  • 1 ½ cups Sourdough Breadcrumbs, optional

Instructions

  • Preheat the oven to 425ºF (218ºC) and butter a 9×13" baking dish.
    Boil a large pot of salted water, add the pasta, and cook until 1 minute less than al dente following the package instructions (the pasta will continue cooking while baking). Drain and set aside.
    Meanwhile, grate the cheeses in a large bowl and set aside.
    1 lb Pasta, 12 oz Cheddar Cheese, 12 oz Gruyère
  • In the same pot you cooked the pasta in, or a large skillet, melt the butter over medium heat. Then, add the sourdough discard and constantly whisk the roux for a few minutes until it smells toasty and looks like wet sand.
    Slowly pour in the milk while whisking, season with salt and pepper, and bring to a simmer for a few minutes, breaking apart any clumps of discard with your whisk.
    Remove from the heat, add all of the cheese, and whisk until completely melted and you have a cheesy sauce.
    4 TBS Unsalted Butter, 120 g Sourdough Discard, 4 cups Whole Milk, 2 tsp Kosher Salt, 1 tsp Black Pepper
  • Add the drained pasta to the pot and coat thoroughly in the cheese sauce.
    Transfer the pasta to the buttered baking dish and top with sourdough breadcrumbs.
    Bake on a baking sheet for 25-28 minutes, or until the breadcrumbs are dark golden brown and the cheese is bubbly.
    Cool for 5-10 minutes before serving.
    1 ½ cups Sourdough Breadcrumbs

Notes

  • Follow my guide above for more detailed instructions, recipe variations, and photos to make this recipe step by step.
  • This recipe is adapted for sourdough from Alison Roman’s Classic Baked Mac & Cheese recipe in NYT Cooking.
  • Store the sourdough mac and cheese covered in the refrigerator for 3-5 days.
  • Add other spices or flavorings such as paprika, mustard, nutmeg, etc. to taste before adding the grated cheese.
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