Sourdough Zucchini Muffins
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These easy and moist Sourdough Zucchini Muffins are the best way to use zucchini in your garden.
The tender muffins are made with grated zucchini, sour cream or yogurt, oil, and sourdough discard so they remain extremely moist and soft for days.
They’re lightly spiced with cinnamon and nutmeg with a crunchy and shiny topping from raw sugar.
Follow my detailed instructions with photos and tips below so the sourdough discard zucchini muffins rise tall and you get domed bakery-style muffin tops.
👉 Another favorite zucchini recipe you should try is this delicious Sourdough Zucchini Bread.

👍 Why You’ll Love This Recipe
- Simple and quick way to use zucchini from your garden like using bananas in Sourdough Banana Bread or carrots in Sourdough Carrot Cake Scones.
- Sourdough discard, oil, and sour cream (or yogurt) keep the muffins moist and tangy.
- Domed bakery-style tops that rise tall in the oven.
- Crunchy raw sugar topping.
- Lightly spiced with cinnamon and nutmeg, but versatile to add other spices or inclusions like chocolate chips.

🔍 Tips for Making Sourdough Zucchini Muffins
- No need to peel or squeeze out the water in the zucchini in this recipe. Just grate and fold into your batter! The green specks are nice to see in the muffins.
- Rest the batter at least an hour and up to overnight in the refrigerator for domed bakery-style tops.
- Bake at a high temperature (400ºF or 204ºC) so they rise tall.
- Don’t overmix the batter so the muffins will stay tender.
- Line your muffin pan with muffin tins/paper and grease them with oil to prevent sticking.

🛠 Tools Needed
You only need a few basic tools to make these zucchini muffins.
- Baking scale
- Flour and sourdough starter can weigh differently from person to person, so weighing your ingredients is the best option! Measuring your ingredients by weight will make your baking more consistent and accurate.
- Muffin Pan
- I love this USA Muffin Pan because it’s naturally non-stick and heavy-duty.
- Muffin Liners
- Oiled paper liners prevents sticking and help you transport the muffins.
- Spatula and Whisk
- If you have an electric hand mixer or stand mixer, you can also use them to mix the muffin batter.
- Box Grater
- Or a food processor to grate the zucchini.
🛒 Ingredients Needed
See below for my ingredient recommendations and possible substitutions.

- Zucchini, grated
- You don’t need to peel or squeeze water from the zucchini in this easy recipe.
- All-purpose flour
- You can substitute some or all of the all-purpose flour with whole wheat flour or a gluten-free flour like oat flour or almond flour.
- Salt
- Baking Powder
- Cinnamon & Nutmeg
- I like keeping things simple with this recipe using cinnamon and nutmeg as warming spices.
- However, other spices like ginger and cardamom would be great in the muffins too.
- Neutral Oil
- I usually bake muffins with melted butter like my famous Sourdough Blueberry Muffins, but opt for oil in this recipe to keep the muffins extra moist for days.
- You can use vegetable oil, canola oil, avocado oil, coconut oil, or any unflavored oil.
- Sour Cream
- I like the rich tanginess of sour cream paired with zucchini (I also use in these decadent Sourdough Chocolate Muffins), but yogurt is a great substitute like in my Sourdough Cranberry Muffins.
- Use full-fat sour cream for the best flavor.
- Vanilla Extract
- Light brown sugar
- Brown sugar has molasses, which adds a little more richness to the muffins.
- Granulated sugar
- Adds structure and sweetness to the muffins.
- Eggs
- Adds structure to help bind the ingredients together and helps the muffins rise tall.
- Sourdough Discard
- If you don’t have an active sourdough starter, learn how to make one in a week following my how-to guide. See my top sourdough starter tips and other sourdough discard recipes.
- Raw sugar, for topping
- Finishing with raw sugar creates a shiny, crackly exterior on these zucchini muffins that texturally contrasts the soft interior.
Variations
- Add ½ cup of toasted walnuts or pecans to the batter.
- Fold ½ cup of chocolate chips to the batter for chocolate zucchini muffins.
- Add a crumb topping like in my Sourdough Apple Butter Muffins or Sourdough Strawberry Muffins.
- For more brightness, zest lemon or orange into the batter.
- Make sourdough zucchini cream cheese muffins by adding softened cream cheese mixed with powdered sugar into the muffin tins.
💚 How to Make Sourdough Zucchini Muffins
Follow this detailed recipe guide as you make the best sourdough discard zucchini muffins.
1. Grate the Zucchini
Use the large holes of box grater or food processor to grate the zucchini in a bowl. Set aside.

2. Mix the Dry Ingredients
In a large mixing bowl, mix the all-purpose flour, baking powder, salt, cinnamon, and nutmeg.

3. Whisk the Wet Ingredients
In another medium bowl, whisk the two eggs, sugars, oil, sour cream, vanilla extract, and sourdough discard until incorporated.

4. Mix the Batter
Add the wet ingredients to the bowl of dry ingredients and fold with a spatula until only a few flour spots remain.
Gently fold in the grated zucchini until evenly distributed. The batter will be quite wet.


5. Chill the Batter
For the best results, chill the batter for at least one hour and up to overnight.
Chilling the zucchini muffin batter will help the flour and flavors hydrate so it’s easier to scoop, improve the flavor, and help the muffins rise tall in the oven. You can also bake them on your own schedule for convenience!

6. Bake
Preheat the oven to 400ºF (204ºC).
Line your muffin pan with paper liners or tins and spray with non-stick oil or grease.
Divide the zucchini muffin batter evenly among the 12 muffins. It should fill them up almost to the top. I like to use a large ice cream or cookie scoop.
Sprinkle the tops with raw sugar for a sparkly, crunchy topping.
Bake for 23-25 minutes, or until the tops are golden brown and a toothpick inserted into the middle comes out clean.
Cool the muffins on a wire rack.




How to Store and Serve
You can store sourdough zucchini muffins at room temperature, in the refrigerator, or freeze them.
Before storing, always let your muffins cool down completely.
The zucchini muffins can stay moist on the countertop for 3 days, or you can refrigerate them for up to a week.
To freeze, wrap them in plastic wrap and freeze for up to three months in a freezer-safe bag. Thaw overnight and reheat in the oven or a toaster oven.
Serve the muffins for breakfast or brunch as they are or with a schmear of cultured butter, creme fraiche, or ricotta.

❓ Frequently Asked Questions
Can I double the recipe?
Yes. Double all of the ingredients, bake in two muffin pans, and make 24 muffins.
Can I ferment the muffin batter overnight?
Yes, you can mix the sourdough muffin batter and store it in the refrigerator overnight.
How do I make sourdough chocolate zucchini muffins?
Follow the same recipe removing the spices, but add a ¼ cup of Dutch-process cocoa powder and a cup of chocolate chips to the batter.
Can I substitute zucchini with other fruits or vegetables?
You could substitute the zucchini with parsnip, carrots, yellow squash, or grated apples.
What are other favorite sourdough muffin recipes?
I have many other easy sourdough muffin recipes, including Sourdough Lemon Poppy Seed Muffins, Sourdough Bran Muffins, Sourdough Corn Muffins, and Sourdough Pumpkin Cream Cheese Muffins.

Other Sourdough Breakfast Recipes You May Enjoy
Sourdough Maple Pecan Scones
Sourdough Pumpkin Donuts
Cheesy Sourdough Popovers
Asparagus Goat Cheese Sourdough Quiche
Sourdough Croissant Bread Loaf
Sourdough Einkorn Waffles
Sourdough Buttermilk Pancake Mix [and Sourdough Pancakes]
Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins
Sourdough Strawberry Muffins with Crumb Topping
Sourdough Carrot Cake Scones
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Sourdough Zucchini Muffins
Equipment
- 1 Box Grater, or food processor
- 1 Whisk
- 1 Spatula
Ingredients
- 240 g Zucchini, grated, 2 cups
- 210 g All-purpose flour, 1 ¾ cups
- 1 tsp Ground Cinnamon
- ¼ tsp Nutmeg
- ½ tsp Kosher Salt
- 2 tsp Baking powder
- 2 Eggs, room temperature
- 70 g Sour Cream, ⅓ cup
- 165 g Granulated Sugar, ¾ cup
- 50 g Light Brown Sugar, ¼ cup
- 120 g Sourdough Discard, or active starter, ½ cup
- 113 g Neutral Oil, ½ cup, such as vegetable, canola, avocado, or coconut oil
- 1 tsp Vanilla Extract
- Raw Sugar, for topping
Instructions
- Use the large holes of box grater or food processor to grate the zucchini in a bowl. Set aside.
- In a large mixing bowl, add the flour, cinnamon, nutmeg, salt, and baking powder. Set aside.50 g Light Brown Sugar, 210 g All-purpose flour, ½ tsp Kosher Salt, 2 tsp Baking powder, 165 g Granulated Sugar
- In another mixing bowl, whisk the eggs, sugars, sour cream, vanilla, oil, and sourdough discard together until incorporated.2 Eggs, 120 g Sourdough Discard, 113 g Neutral Oil
- Add the wet ingredients to the bowl of dry ingredients and fold with a spatula until just a few floury spots remain. Fold in the grated zucchini.240 g Zucchini
- Cover and chill the muffin batter in the refrigerator for at least an hour and up to overnight. This will help hydrate the flour, improve the flavor, and help them rise tall in the oven.
- Preheat the oven to 400ºF (204ºC). Prepare a muffin pan with liners and spray with oil or grease.Equally divide the batter among the 12 muffin cups (I like using an ice cream or cookie scoop) and sprinkle with raw sugar on top.Bake for 23-25 minutes until the tops start to brown and a toothpick inserted into the middle comes out clean.Cool on a wire rack.
Notes
- Follow my guide above for more detailed instructions, tips, and photos to make these easy sourdough zucchini muffins.



They are so yummy! I didn’t have sour cream so substituted whole milk yogurt and they still turned out. I appreciate all your tips and thank you for sharing these recipes with us!!
My kids 8 and 5 approve! They’re delicious! So easy to make and so moist. I let them just refrigerate for 1 hr and they were great!
They’ll make a perfect lunchbox snack to take to school!
So easy to make and delicious!