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Bite taken out of a Sourdough banana chocolate chip cottage cheese protein muffin with other muffins surrounding it, flowers, and bananas.

Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins

Posted on May 9, 2025May 9, 2025 by sourdoughbrandon

This post may contain affiliate links for products and ingredients I use and recommend. For more information, see my affiliate disclosures.

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Table Of Contents
  1. 👍 Why You'll Love This Recipe
  2. 🔍 Baking Tips
  3. 🛠 Tools Needed
  4. 🛒 Ingredients Needed
    • Variations
  5. 🍌 How to Make Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins
    • 1. Blend the Wet Ingredients
    • 2. Combine the Dry Ingredients
    • 3. Mix the Muffin Batter
    • 4. Chill the Batter
    • 5. Bake
  6. How to Store and Serve
  7. ❓ Frequently Asked Questions
    • Can I double the recipe?
    • What are the nutrition facts on these sourdough protein muffins?
    • Can I use frozen bananas?
    • Can I ferment the muffin batter overnight?
    • How do I make gluten-free sourdough protein muffins?
    • Can I add berries?
    • What are other favorite sourdough muffin recipes?
  8. Other Sourdough Breakfast Recipes You May Enjoy:
  9. Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins

Use a blender to mix most of the ingredients for these Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins that have 10g of protein in each muffin!

These not-too-sweet sourdough discard muffins come together in an instant and are a perfect grab-and-go protein breakfast muffin. They’re made with a cup of cottage cheese, eggs, and protein powder so they’re more filling than traditional muffins, but still soft and moist.

Bananas and maple syrup add natural sweetness, and I fold in chocolate chips for that classic banana chocolate chip muffin combo.

This protein muffin recipe is very flexible (can easily make gluten-free!) and I include lots of variations, tips, and substitutions in the guide below.

👉 For more high-protein sourdough recipes, see my recipes for Sourdough Cottage Cheese Protein Pancakes and Sourdough Chocolate Protein Granola Bars.

Close up of a bite taken out of a sourdough banana chocolate chip cottage cheese protein muffins.

👍 Why You’ll Love This Recipe

  • High-protein sourdough muffins with 9-10g of protein per serving.
  • Come together quickly and use a blender for mixing the wet ingredients.
  • Can make batter the night before, rest overnight, and bake in the morning.
  • Bananas, cottage cheese, and sourdough discard keep the muffins moist and tangy.
  • Not-too-sweet, using only bananas and maple syrup for sweetness, and optional chocolate chips.
  • This is a very adaptable recipe with many variations, and you can make it gluten-free.
Sourdough banana chocolate chip cottage cheese protein muffin in a paper wrapper with muffins in the background, flowers, and bananas.

🔍 Baking Tips

  • It’s helpful to rest the batter for at least an hour and up to overnight in the refrigerator for taller bakery-style domed tops.
  • Use mini chocolate chips that distribute better and don’t sink in the batter.
  • Overbaking will lead to a dry muffin. Use a toothpick to test if they’re done (no crumbs should remain) and follow the baking indicators.
  • No salt is needed because cottage cheese is already salted.
  • Gently fold the ingredients and don’t overmix the batter so the muffins will stay tender.
  • Line your muffin pan with muffin tins/paper and grease them with oil to prevent sticking.
Bite taken out of a Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffin in a paper muffin liner with chocolate chips, bananas, more muffins, and flowers around it.

🛠 Tools Needed

You only need a blender and a few basic tools to make these muffins.

  • Baking scale
    • Flour and sourdough starter can weigh differently from person to person, so weighing your ingredients is the best option! Measuring your ingredients by weight will make your baking more consistent and accurate.
  • Blender
    • Cottage cheese has small clumps that a blender or food processor will mix with your wet ingredients.
  • Muffin Pan
    • I love this USA Muffin Pan because it’s naturally non-stick and heavy-duty!
  • Muffin Liners
    • They help prevent sticking, look nice when serving, and let you take them on the go.
  • Spatula
    • For folding the chocolate chips and dry ingredients into the wet.

🛒 Ingredients Needed

See below for my ingredient recommendations and possible substitutions.

Labeled bowls of ingredients needed for sourdough banana chocolate chip protein muffins including cottage cheese, bananas, chocolate chips, souordough discard, flour, baking powder, protein powder, coconut oil, eggs, and maple syrup.
  • Bananas
    • The bananas add needed moisture and natural sweetness to the muffins.
    • If you love bananas, you have to try my delicious Sourdough Banana Bread!
  • Cottage Cheese
    • Use full-fat cottage cheese for the most flavor and richness. Daisy is the brand I used for recipe testing.
    • Cottage cheese is already salted, so you don’t need to add salt in this recipe.
    • Substitute the cottage cheese with Greek yogurt (no need for a blender).
  • Maple Syrup
    • You can adjust the sweetness level in the recipe by adding more or less maple syrup. The caramel sweetness pairs well with the bananas and chocolate chips.
    • Substitute with agave, honey, or date syrup.
    • Other favorite maple recipes are these Sourdough Maple Pecan Sticky Buns and Sourdough Pumpkin Maple Cookies.
  • Eggs
    • The eggs add structure and lift to these muffins and a little more protein.
    • Can substitute with ½ cup of applesauce or flax eggs.
  • Sourdough Discard
    • If you don’t have an active sourdough starter, learn how to make one in a week following my how-to guide. See my top sourdough starter tips and other sourdough discard recipes.
  • Coconut Oil, melted
    • You can substitute with melted butter, olive oil, or another neutral oil.
  • All-purpose flour
    • You can substitute some or all of the all-purpose flour with whole wheat flour or with a gluten-free flour like oat flour or almond flour to make these gluten-free muffins.
  • Baking Powder
    • Helps the muffins stay soft and rise tall in the oven.
  • Vanilla Protein Powder
    • Protein powders can vary quite a bit by ingredients, flavors, and protein amounts. This is important to keep in mind following this recipe as my muffins have about 10g of protein in them using this brand of whey protein powder, but yours may have more or less, depending on the brand you use.
    • If you skip the protein powder, add 1 ½ tsp of vanilla extract to the batter.
  • Mini Chocolate Chips
    • The mini chocolate chips, or finely chopped chocolate, won’t sink to the bottom of your batter such as in my Sourdough Pumpkin Chocolate Chip Bread.
    • You can leave out to just make sourdough banana muffins or sub with sugar-free chocolate chips or cacao nibs.

Variations

  • Make a nut butter swirl by adding 2-3 TBS of peanut butter or almond butter in the batter.
  • Substitute the chocolate chips with blueberries or strawberries (check out my Sourdough Blueberry Yogurt Muffins or Sourdough Strawberry Muffins with Crumb Topping).
  • For a tropical twist, add shredded coconut or chopped pineapple to the batter.
  • Use rolled oats instead of all-purpose flour and grind them into oat flour.
  • For a salty variation, add in chopped peanuts or pretzels.

🍌 How to Make Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins

Follow this detailed recipe guide as you make the best sourdough protein muffins.

This recipe makes 12 soft muffins.

1. Blend the Wet Ingredients

Add the bananas, eggs, cottage cheese, sourdough discard, maple syrup, and melted coconut oil to a blender or food processor and blend until completely smooth.

Blender with mixed wet ingredients for sourdough banana cottage cheese muffins.

2. Combine the Dry Ingredients

In a large mixing bowl, mix the flour, baking powder, and vanilla protein powder together.

Bowl of mixed dry ingredients for sourdough banana protein muffins.

3. Mix the Muffin Batter

Pour the blended wet ingredients into the bowl of dry ingredients and use a spatula to fold the sourdough discard protein muffin batter together until just a few lumps remain.

Finally, fold the chocolate chips in last until incorporated.

Note: Mixing the muffin batter in a bowl helps keep them tender by not overmixing. However, if you’re in a rush, you can mix it all in a blender and fold in the chocolate chips after.

Pouring wet ingredients into bowl of dry ingredients for sourdough banana cottage cheese protein muffins.
Spatula folding mini chocolate chips in a bowl with sourdough banana cottage cheese protein muffins batter.
Mixed sourdough banana chocolate chip protein muffin batter.

4. Chill the Batter

For the best results, cover and chill the batter for an hour and up to overnight.

This hydrates the muffin batter so the flavors meld. Also, baking cold muffin batter helps them release more steam so they rise taller in the oven.

5. Bake

Preheat the oven to 375ºF (191ºC).

Line your muffin pan with paper liners or tins and spray with non-stick oil or grease.

Divide the cold muffin batter evenly among the 12 muffins. I like to use a large ice cream or cookie scoop.

Sprinkle more chocolate chips on top.

Bake for 20-23 minutes, or until the tops are light golden brown and a toothpick inserted comes out clean.

Finally, remove from the oven and cool completely on a wire rack.

Muffin pan with unbaked sourdough banana chocolate chip protein muffins in them with muffin liners and peeled bananas to the side.
Baked sourdough banana chocolate chip protein muffins in muffin pan with flowers and bananas to the side.

How to Store and Serve

You can store sourdough banana chocolate chip cottage cheese protein muffins at room temperature, in the refrigerator, or freeze them.

The sourdough discard, bananas, and cottage cheese help keep them soft and moist for a few days on the counter. Alternatively, you can wrap and refrigerate them for 5 days.

To freeze, wrap them in plastic wrap and freeze for up to three months in a freezer-safe bag. Thaw overnight and reheat in the oven or a toaster oven.

These sourdough protein muffins are a great, quick grab-and-go breakfast or pre- or post-gym workout fuel.

Two halves of a sourdough banana chocolate chip cottage cheese protein muffin on a plate with a paper muffin liner.

❓ Frequently Asked Questions

Can I double the recipe?

Yes. Double all of the ingredients, bake in two muffin pans, and make 24 banana protein muffins.

What are the nutrition facts on these sourdough protein muffins?

Nutrition facts can vary based on the ingredients you use, including protein powder (see ingredients section for brand I use).

However, each muffin serving when I make them comes out to: 230-250 calories, 9-10g protein, 9-10g fat, 28-30g carbohydrates.

Can I use frozen bananas?

You can use frozen bananas, but you should thaw them before blending and mixing them into your muffin batter.

Can I ferment the muffin batter overnight?

Yes, you can mix the sourdough protein muffin batter and store it in the refrigerator overnight.

How do I make gluten-free sourdough protein muffins?

Substitute the all-purpose flour with a gluten-free flour like cup-for-cup, almond flour, or oat flour and use a gluten-free sourdough starter.

Can I add berries?

Feel free to fold in berries or other fruit instead of chocolate chips. Be sure to check out my Sourdough Blueberry Yogurt Muffins, Sourdough Strawberry Muffins with Crumb Topping, or Sourdough Lemon Poppy Seed Muffins.

What are other favorite sourdough muffin recipes?

I have many other easy sourdough discard muffin recipes, including Sourdough Bran Muffins, Sourdough Corn Muffins, Sourdough Pumpkin Cream Cheese Muffins, and Sourdough Chocolate Muffins.


Other Sourdough Breakfast Recipes You May Enjoy:

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Sourdough banana chocolate chip cottage cheese protein muffins with a bite taken out of one in a paper muffin liner with flowers and bananas.
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5 from 1 vote

Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins

By: Sourdough Brandon
These high-protein Sourdough Banana Chocolate Chip Cottage Cheese Muffins are so easy to make with most ingredients mixed in a blender! They're not too sweet, soft, and filling.
Prep Time10 minutes mins
Cook Time20 minutes mins
Resting Time (optional)1 hour hr
Total Time1 hour hr 30 minutes mins
Yield or Serving: 12 Muffins

Equipment

  • 1 Baking Scale
  • 1 Blender, or food processor
  • 1 Spatula
  • 1 Muffin Pan
  • 12 Muffins Liners, I like the tulip liners linked for muffins with crumb toppings

Ingredients

  • 2 Bananas
  • 226 g Cottage Cheese, 1 cup
  • 2 Eggs, room temperature
  • 80 g Maple Syrup, ¼ cup
  • 120 g Sourdough Discard, or active starter, ½ cup
  • 52 g Refined coconut oil, melted, ¼ cup
  • 170 g All-purpose flour, or gluten-free flour, 1 ¼ cup
  • 2 tsp Baking powder
  • 60 g Vanilla Protein Powder, 2 scoops , varies by brand
  • 93 g Semi-sweet Mini Chocolate Chips, ½ cup , plus more for topping
Prevent your screen from going dark

Instructions

  • Add all of the wet ingredients to a blender or food processor and blend until smooth.
    226 g Cottage Cheese, 2 Eggs, 80 g Maple Syrup, 120 g Sourdough Discard, 52 g Refined coconut oil, 2 Bananas
  • Combine the dry ingredients in a large bowl.
    170 g All-purpose flour, 2 tsp Baking powder, 60 g Vanilla Protein Powder
  • Pour the blended wet ingredients into the bowl with the dry ingredients and use a spatula to fold the muffin batter together until only a few lumps remain.
    Add the chocolate chips and fold until incorporated.
    93 g Semi-sweet Mini Chocolate Chips
  • Cover and chill the muffin batter (optional) in the refrigerator for at least an hour and up to overnight. This will help the flavors meld and rise tall in the oven.
  • Preheat the oven to 375ºF (191ºC). Prepare a muffin pan with liners and spray with oil or grease.
    Equally divide the batter among the 12 muffin cups (I like using an ice cream or cookie scoop) and sprinkle more chocolate chips on top.
    Bake for about 20-23 minutes or until a toothpick inserted into the middle comes out clean and tops just turn golden brown.
    Cool completely on a wire rack.

Notes

  • Follow my guide above for more detailed instructions, tips, and photos to make these easy sourdough banana chocolate chip cottage cheese protein muffins.
  • Each muffin is approximately 9-10g of protein, depending on the brand of protein powder you use.
Tried this recipe?Rate the recipe above, comment, and follow/mention @sourdoughbrandon on Instagram & Facebook
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4 thoughts on “Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins”

  1. Amy says:
    May 12, 2025 at 5:26 pm

    5 stars
    Hearty and filling! I appreciate that they’re not too sweet. I used vegan chocolate chips.

    Reply
    1. sourdoughbrandon says:
      May 14, 2025 at 7:51 am

      Thank you!

      Reply
  2. Sarah says:
    May 11, 2025 at 8:10 pm

    where is the banana amount in this recipe?

    Reply
    1. sourdoughbrandon says:
      May 11, 2025 at 8:16 pm

      It’s 2 bananas blended with the wet ingredients!

      Reply

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