Sourdough Brandon Logo
Menu
  • Home
  • Recipes
    • How to Make a Sourdough Starter
    • Breads
    • Sourdough Discard
    • Desserts
    • Breakfast
  • Guides
  • Tools
  • Newsletter
  • Events
  • About
    • Contact me
Menu
Sourdough blueberry muffins in a muffin pan and one with a bite taken out of it on a plate with fresh blueberries scattered around.

Sourdough Blueberry Yogurt Muffins

Posted on April 19, 2024April 19, 2024 by sourdoughbrandon

This post may contain affiliate links for products and ingredients I use and recommend. For more information, see my affiliate disclosures.

Share this:
Jump to Recipe
Table Of Contents
  1. 👍 Why You'll Love This Recipe
  2. 🔍 Tips for Making Sourdough Blueberry Muffins
  3. 🛠 Tools Needed:
  4. 🛒 Ingredients Needed:
    • Blueberry Muffin Variations
  5. 🫐 How to Make Sourdough Blueberry Muffins
    • 1. Mix the Dry Ingredients
    • 2. Mix the Wet Ingredients
    • 3. Mix the Muffin Batter and Fold in the Blueberries
    • 4. Chill the Batter and Overnight Option
    • 5. Bake
  6. How to Store
  7. ❓ FAQs:
    • Can I double the recipe?
    • Can I use other fruits instead of blueberries?
    • How to keep blueberries from sinking in muffins?
    • How do you get a domed muffin top?
    • Are fresh or frozen blueberries better?
    • Can you use active sourdough starter?
  8. Other Sourdough Breakfast Recipes You May Enjoy:
  9. Sourdough Blueberry Yogurt Muffins

My aim in crafting these Sourdough Blueberry Muffins was to achieve an exceptionally moist, bakery-quality treat utilizing sourdough discard and yogurt, packed with bursts of juicy blueberries!

These sourdough discard blueberry muffins have beautifully domed tops and stay fluffy and moist for days. What’s more, they offer an overnight option, allowing you to prepare the batter the night before and bake them fresh in the morning.

In the recipe guide below, you’ll find a wealth of tips, accompanied by photos and detailed instructions, ensuring you master these breakfast muffins. Plus, I’ve included suggestions for substitutions and variations to suit your preferences in the ingredients needed section.

👉 For more of my favorite sourdough muffin recipes, check out my recipes:

  • Sourdough Apple Butter Muffins
  • Sourdough Bran Muffins
  • Sourdough Honey Corn Muffins
  • Sourdough Pumpkin Cream Cheese Muffins
Bite taken out of a sourdough blueberry muffin on a plate with fresh blueberries scattered around and a muffin in the background.

👍 Why You’ll Love This Recipe

  • Uses a full pint of fresh blueberries.
  • Can mix the batter the night before and bake in the morning.
  • No stand mixer required.
  • Have domed muffin tops like bakery-style muffins.
  • They stay moist for days and store well.
Sourdough blueberry muffin on a plate with fresh blueberries, a knife, and yellow flowers.

🔍 Tips for Making Sourdough Blueberry Muffins

  • Use fresh blueberries for less bursting and streaking
    • Fresh blueberries don’t release as much liquid or burst as easily in the oven as frozen blueberries.
  • Don’t overmix the batter
    • For the most tender muffins, mix the batter just until the flour is hydrated and no more. Just like making pancakes or other quick breads like Sourdough Banana Bread, overmixing leads to more gluten development, which can make tougher and chewier baked goods.
  • For domed tops, rest the batter for at least an hour in the refrigerator and up to overnight.
  • Bake at a high temperature for taller, fluffier muffins.
    • Bake the muffins at 400ºF (204ºC) so they rise tall in the oven.
  • Dot the tops with blueberries
    • Reserve about ⅓ of the blueberries to dot the tops before baking. The blueberries burst and make the muffins look extra juicy and attractive.
Three sourdough blueberry yogurt muffins stacked on top of each other with a knife, fresh blueberries, a towel, and cooling rack.

🛠 Tools Needed:

See below for my tool recommendations and substitutions.

  • Baking scale
    • Ingredients like flour and sourdough starter weigh differently from person to person when measured by volume. For the best results, I recommend using a baking scale.
  • Muffin Pan
    • I use a standard muffin pan to make 12 muffins. My favorite pan is this USA Muffin Pan because it’s non-stick, easy to clean, and bakes evenly.
    • If you want to make jumbo muffins, you can use a jumbo muffin pan to make about eight jumbo muffins!
  • Whisk
    • For mixing the wet and dry ingredients.
  • Spatula
    • To mix the muffin batter and fold in the blueberries.
  • Large cookie or ice cream scoop (optional)
    • Helps portion the muffin batter easily in the muffin tins.

🛒 Ingredients Needed:

See below for my ingredient recommendations, substitutions, and favorite blueberry muffin variations.

Labeled bowls of ingredients needed for sourdough blueberry muffins including all-purpose flour, baking powder, salt, granulatd sugar, light brown sugar, eggs, vanilla extract, Greek yogurt, melted butter, fresh blueberries, and sourdough discard.
  • All-purpose flour
    • AP flour has enough protein and gluten to help the muffins rise tall, but still remain light and tender.
    • To make healthy sourdough whole wheat blueberry muffins, substitute all or some of all-purpose flour with whole wheat, spelt, or einkorn flour. I’d start with about ½ cup of each of any of these flours (60 grams). The muffins will be denser, but have a nice chew and flavor!
  • Baking powder
    • I don’t use baking soda in this recipe as it reacts immediately when mixed with acid (the yogurt and starter in this recipe).
    • Double-acting baking powder reacts when heated. That way, you can have the overnight option for the muffins and they’ll still rise tall the next morning.
  • Salt
  • Lemon zest (optional)
    • Lemon zest enhances the flavor of the blueberries. It makes them taste sweeter and adds a bit of acidity.
  • Granulated sugar
    • Sprinkle the tops with more sugar for a slight crunch and sparkle.
  • Light brown sugar
    • The small amount adds even more moisture and a deeper flavor.
  • Vanilla extract
  • Greek yogurt, plain whole-milk
    • Yogurt is key for the most tender and moist muffins. Whole milk yogurt has a higher fat content, which contributes more flavor and richness than low-fat yogurt (which is fine to use too if you don’t have whole milk yogurt).
    • Substitute with an equal amount of sour cream.
  • Sourdough discard (or active starter)
    • Sourdough discard is unfed sourdough starter that you can use in sourdough discard recipes. When I feed my starter, I store the discard in the refrigerator so there’s no waste. Learn how to make sourdough starter from scratch and my top sourdough starter tips.
  • Unsalted butter, melted and cooled
    • For the best and richest flavor, I generally prefer using butter in my recipes over vegetable oils just like in my sourdough pumpkin bread recipe.
  • Fresh blueberries
    • Like my sourdough strawberry scones and sourdough blueberry scones, I prefer using fresh blueberries over frozen berries because they don’t burst or streak the batter as much. Frozen berries can also add extra moisture to the batter, resulting in a purplish batter.
    • If your fresh berries are extremely ripe or juicy, you can freeze the pint an hour or two before mixing them into your batter.
    • To use frozen berries, quickly fold the frozen berries (no need to thaw) into the batter. There will be inevitable bleeding, but they’ll still taste great!

Blueberry Muffin Variations

  • Blueberry Corn Muffins:
    • Substitute ½ cup (60 grams) of all-purpose flour with fine corn meal.
  • Blueberry Almond Muffins:
    • Substitute ½ cup of AP flour with ½ cup (48 grams) of almond flour. Add ¼ teaspoon of almond extract and some slivered almonds to the batter. Then, top the muffins with slivered almonds.
  • Blueberry Cream Cheese Muffins:
    • Follow the recipe, but add a couple tablespoons of softened cream cheese mixed with powdered sugar into the middle of the muffins. To do so, scoop a couple TBS of batter into the muffin pans, add the cream cheese, and scoop the rest of the batter on top of the cream cheese.
  • Vegan Sourdough Blueberry Muffins:
    • Substitute the yogurt with a plant-based yogurt, the eggs with about ½ cup of applesauce, and the melted butter with the same amount of melted plant-based butter or an equal amount of melted coconut oil.
  • Gluten free Sourdough Blueberry Muffins:
    • To make gluten-free muffins, use a gluten-free sourdough starter and substitute the AP flour with cup for cup/measure for measure. You could add about ½ cup of almond flour or ½ cup of buckwheat flour (60 grams) as well.
  • Add a crumb topping:
    • Make an easy streusel or crumb topping by mixing ½ cup (60 grams) of all-purpose flour, ½ tsp of cinnamon, ¼ cup of granulated sugar and ¼ cup of light brown sugar, and 4 TBS of melted butter. Sprinkle on top of the muffins and bake.

🫐 How to Make Sourdough Blueberry Muffins

Follow this visual recipe guide as you make the sourdough muffins.

1. Mix the Dry Ingredients

In a large mixing bowl, combine the flour, salt, baking powder, granulated sugar, light brown sugar, and lemon zest.

Break apart any clumps of brown sugar and rub the lemon zest into the mixture with your hands.

Large mixing bowl of dry ingredients for sourdough blueberry muffins mixed together with a whisk.

2. Mix the Wet Ingredients

In another mixing bowl, whisk the eggs, yogurt, sourdough discard, and vanilla extract until thick and pale yellow.

Pour in the melted butter and whisk to combine.

Pouring melted butter into bowl of wet ingredients with a whisk.
Bowl of mixed wet ingredients with a whisk.

3. Mix the Muffin Batter and Fold in the Blueberries

Pour the wet ingredients into the bowl of dry ingredients and use a spatula to fold the batter until the batter is thick and only a few floury spots remain.

Dump in most of the fresh blueberries, leaving enough blueberries to the side to dot each muffin with about four or five blueberries.

Technically, this is about 48-60 blueberries (about ¾ cup) left to the side to dot on top but it doesn’t have to be exact unless you want to!

Gently fold in the berries until evenly distributed throughout the muffin batter.

Four images labeled with steps of mixing the blueberry muffin batter, including pouring in the wet ingredients, mixing it with the dry ingredients, and folding in the blueberries.

4. Chill the Batter and Overnight Option

For taller bakery-style muffins with domed tops, cover the bowl of muffin batter and chill it for at least an hour and up to overnight.

As the batter rests, the flour will continue to hydrate and the flavors will meld even more.

Chilling muffin batter helps create taller, fluffier muffins with domed tops as it will release more steam when they bake in the hot oven.

5. Bake

Preheat the oven to 400ºF (204ºC).

Line a standard 12-cup muffin pan with muffin liners. It’s optional, but to prevent sticking, I like to spray the insides of the muffin liners with non-stick baking spray or grease them slightly with oil or butter. The liners will peel easier from the muffins this way.

Fill the muffin cups almost to the brim with batter. Then, dot the tops of the muffins with four or five blueberries and sprinkle a generous amount of granulated sugar on top for a crunchy, sparkly topping.

Bake for 23-25 minutes until the tops of the muffins are golden brown and a toothpick inserted into the middle comes out clean. If using frozen berries, they may need an extra minute or two.

Cool completely on a wire rack.

Baking Tip: Use a large cookie or ice cream scoop to portion equal amounts of muffin batter into the tins.

Hand sprinkling granulated sugar on top of blueberry muffins in a muffin pan.
Unbaked sourdough blueberry muffins in a muffin pan.
Baked sourdough blueberry muffins in a muffin pan.

How to Store

One of the beauties of these blueberry yogurt muffins is how well they keep! The yogurt and sourdough discard help keep them fresh and moist for many days.

To store, keep them in an airtight container or ziplock bag for 4-5 days. If they stale some, you can reheat them quickly in a toaster oven or microwave.

One of my favorite ways to serve slightly stale muffins is to slice them in half and toast the cut sides down with a pat of butter in a skillet until toasty!

To freeze, store the cooled muffins in an airtight container for up to 3 months. Thaw them overnight in the refrigerator and reheat in the oven or microwave.

Hand holding a sourdough blueberry muffin.

❓ FAQs:

Can I double the recipe?

Yes. Simply double all of the ingredients to make up to 24 muffins.

Can I use other fruits instead of blueberries?

Yes, you can use blackberries or raspberries in this recipe! Strawberries have more liquid, so you’ll want to decrease the amount of strawberries and yogurt slightly.

How to keep blueberries from sinking in muffins?

Before mixing, you can coat the blueberries in a light dusting of flour to prevent sinking. However, I find that they don’t sink in this muffin recipe and evenly distribute in the batter.

Plus, by saving some blueberries to dot the top, you get blueberries throughout the muffin.

How do you get a domed muffin top?

By chilling the batter for at least an hour and up to overnight and by baking the muffins at a hot temperature (400-425ºF).

Are fresh or frozen blueberries better?

I refer fresh blueberries in muffin recipes for less bursting and streaking. Frozen blueberries tend to add extra water to the muffins.

Can you use active sourdough starter?

Yes, you can use sourdough discard or active sourdough starter in this recipe.

A bite taken out of a sourdough blueberry muffin on a plate with a knife and fresh blueberries.

Other Sourdough Breakfast Recipes You May Enjoy:

Stack of sourdough buttermilk pancakes on a plate with maple syrup with a large container of homemade sourdough pancake mix in the background with a flour scoop.

Sourdough Buttermilk Pancake Mix [and Sourdough Pancakes]

Make the best Sourdough Buttermilk Pancakes with this big batch Sourdough Buttermilk Pancake Mix! The…
Read More
Bite taken out of a Sourdough banana chocolate chip cottage cheese protein muffin with other muffins surrounding it, flowers, and bananas.

Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins

These high-protein Sourdough Banana Chocolate Chip Cottage Cheese Protein Muffins are not too sweet and…
Read More
Sourdough strawberry muffins with crumb topping on a wire rack with strawberries, oats, and flowers.

Sourdough Strawberry Muffins with Crumb Topping

Use fresh strawberries to make these fluffy Sourdough Strawberry Muffins with a crunchy oat crumb…
Read More
Sourdough carrot cake scone on a plate with cream cheese glaze on top and pecans, raisins, and carrots scattered around and more scones in the background on a wire rack.

Sourdough Carrot Cake Scones

These easy Sourdough Carrot Cake Scones are packed with carrots, nuts, raisins, and spices, and…
Read More
Sourdough lemon poppy seed muffins on a plate with dripping lemon glaze and a sliced lemon.

Sourdough Lemon Poppy Seed Muffins

Popping with tangy lemon flavor, these Sourdough Lemon Poppy Seed Muffins are made with sourdough…
Read More
Plate with a sourdough cinanmon raisin english muffin sliced open with butter and a butter knife, cinnamon sticks, raisins, and english muffins to the side.

Sourdough Cinnamon Raisin English Muffins

Sourdough Cinnamon Raisin English Muffins are fluffy with plump raisins, warm cinnamon, and are sweetened…
Read More
Sourdough chocolate muffins with chocolate chunks and flaky salt in a muffin pan.

Sourdough Chocolate Muffins

These easy, not-too-sweet Sourdough Chocolate Muffins are made with tangy sourdough discard, sour cream or…
Read More
Stack of sourdough cottage cheese protein pancakes on a plate with blueberries, drizzled with maple syrup, and a fork.

Sourdough Cottage Cheese Protein Pancakes

These Sourdough Cottage Cheese Protein Pancakes are so easy to make! Just mix the ingredients…
Read More
Flaky sourdough biscuits on a platter.

Flaky Sourdough Biscuits

Make the flakiest Sourdough Biscuits with this easy Southern-style recipe using sourdough discard and buttermilk….
Read More
Sourdough maple pecan sticky bun on a plate with a fork.

Sourdough Maple Pecan Sticky Buns

Made with brioche dough, these homemade Sourdough Sticky Buns have a pull-apart texture with a…
Read More

⭐️ Did You Make This Recipe? ⭐️

Leave a star review and/or comment below!

Tag me on Instagram or Facebook @SourdoughBrandon or PIN this recipe on Pinterest to come back to it later!

Sourdough blueberry muffin in a muffin pan with fresh blueberries.
Print Recipe (Email Required) Pin Recipe Save Saved!

Rate this Recipe

4.98 from 37 votes

Sourdough Blueberry Yogurt Muffins

By: Sourdough Brandon
Sourdough discard and yogurt make these Sourdough Blueberry Muffins extremely moist! The bakery-style muffins are bursting full of juicy blueberries and can be made with an overnight option.
Prep Time10 minutes mins
Cook Time24 minutes mins
Resting Time (recommended)1 hour hr
Total Time1 hour hr 34 minutes mins
Yield or Serving: 12 Muffins

Equipment

  • 1 Baking Scale
  • 1 Whisk
  • 1 Spatula
  • 1 Muffin Pan

Ingredients

  • 210 g All-purpose flour, 1 ¾ cups
  • ½ tsp Kosher Salt
  • 2 tsp Baking Powder
  • 1 TBS Lemon Zest, optional, from one lemon
  • 165 g Granulated Sugar, ¾ cup, plus more for topping
  • 50 g Light Brown Sugar, ¼ cup
  • 2 Eggs, room temperature
  • 120 g Greek Yogurt, ½ cup, plain, whole milk preferred
  • 1 tsp Vanilla Extract
  • 120 g Sourdough Discard, ½ cup, or active starter
  • 113 g Unsalted Butter, ½ cup or 1 stick, melted and cooled
  • 340 g Fresh Blueberries, 2 cups or a 1 12 oz package
Prevent your screen from going dark

Instructions

  • In a large mixing bowl, combine the flour, salt, baking powder, and sugars. Add the lemon zest and rub it into the flour mixture and break apart any clumps of brown sugar.
    210 g All-purpose flour, ½ tsp Kosher Salt, 2 tsp Baking Powder, 1 TBS Lemon Zest, 165 g Granulated Sugar, 50 g Light Brown Sugar
  • In another bowl, whisk the eggs, yogurt, vanilla extract, and sourdough discard until thick and pale yellow. Pour the melted and cooled butter in last and whisk until combined.
    2 Eggs, 120 g Greek Yogurt, 1 tsp Vanilla Extract, 120 g Sourdough Discard, 113 g Unsalted Butter
  • Pour the wet ingredients into the bowl of dry ingredients and use a spatula to mix together until most of the flour is hydrated and a few lumps remain.
    Gently fold about ⅔ of the blueberries into the batter, reserving enough berries to top the muffins later with 4-5 blueberries each.
    340 g Fresh Blueberries
  • For tall muffins with domed muffin tops, cover and chill the muffin batter for at least an hour in the refrigerator and up to overnight.
  • Preheat the oven to 400ºF (204ºC).
    Line a standard 12-cup muffin pan with muffin liners or tins and butter or spray them with non-stick spray to prevent sticking.
  • Fill the muffin liners almost to the brim with muffin batter. For even distribution, you can use a large cookie scoop or ice cream scoop.
    Dot the tops of the muffins with 4-5 reserved blueberries and a generous sprinkle of granulated sugar.
    Bake for about 23-25 minutes until the tops are golden brown and a toothpick inserted into the middle comes out clean. Cool for five minutes in the muffin pan before transferring to a wire rack to cool completely.

Notes

  • Follow my guide above for more detailed instructions, substitutions, photos to make this recipe step-by-step, storage options, tips, and FAQs.
  • For an overnight option, make and chill the batter overnight in the refrigerator and bakee the next morning.
  • You can substitute fresh with frozen blueberries, but may get more purple streaking and bursting in the batter. Don’t thaw beforehand. They’ll still taste great!
Tried this recipe?Rate the recipe above, comment, and follow/mention @sourdoughbrandon on Instagram & Facebook
Share this:

66 thoughts on “Sourdough Blueberry Yogurt Muffins”

Comments navigation

Older comments
Newer comments
  1. Ellie says:
    May 12, 2024 at 8:05 pm

    5 stars
    I made the blueberry corn version and they were absolutely the best blueberry muffins I’ve ever made. They rose fabulously and had just the right amount of sweetness. I also appreciate the weights of the ingredients in the recipe steps…no scrolling up and down. These will be on repeat!

    Reply
  2. Debi says:
    May 12, 2024 at 6:21 pm

    5 stars
    These were VERY Good Muffins. Were a hit with my family and will definitely be
    making them again. Followed the recipe as written, as usual your instructions were great, so easy to follow. The lemon zest flavor was great, mild but noticeable. Next time will try with the almond flour. Love your recipes. Thank you.

    Reply
  3. Monica Merriman says:
    May 6, 2024 at 10:27 am

    How would I substitute Einkorn in this recipe? My son can’t tolerate any other wheat.

    Reply
    1. sourdoughbrandon says:
      May 6, 2024 at 11:42 am

      I haven’t tried the recipe with einkorn, but you should be able to substitute the flour with it although they won’t rise as tall. You may need to lower the amount of yogurt slightly as einkorn tends to soak up liquid slower.

      Reply
  4. Bianca says:
    May 5, 2024 at 10:40 am

    Hello,

    Can I add lemon juice from the 1 lemon? If so how much?

    Thanks!

    Reply
    1. sourdoughbrandon says:
      May 6, 2024 at 11:39 am

      I wouldn’t substitute lemon juice in this recipe, unless you’re adding a small amount because it will add extra liquid to the batter. Otherwise, you’d need to cut back on some of the yogurt some as there isn’t any other liquid in the recipe (except from the starter).

      Reply
  5. Eunice says:
    April 28, 2024 at 12:04 pm

    5 stars
    Made these this morning and they came out perfect! Thanks for the great recipe. I really commend you on the thoughtful way you write and lay out your recipes. You make it so easy for us home bakers.

    Reply

Comments navigation

Older comments
Newer comments

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Home » Recipes » Sourdough Discard » Sourdough Blueberry Yogurt Muffins

ABOUT BRANDON

Picture of Brandon with Sourdough

I am a home baker and sourdough recipe developer and educator living in the hills of rural Massachusetts.

I hope to bring my passion for sourdough baking to you with detailed sourdough bread and sourdough discard recipes to you and your family.


CONNECT WITH ME

RECENT POSTS:

  • Stack of sourdough buttermilk pancakes on a plate with maple syrup with a large container of homemade sourdough pancake mix in the background with a flour scoop.
    Sourdough Buttermilk Pancake Mix [and Sourdough Pancakes]May 20, 2025
  • Mason jar with strawberry rhubarb jam with canned jam in the background and fresh strawberries and rhubarb.
    Strawberry Rhubarb JamMay 17, 2025
  • Bite taken out of a Sourdough banana chocolate chip cottage cheese protein muffin with other muffins surrounding it, flowers, and bananas.
    Sourdough Banana Chocolate Chip Cottage Cheese Protein MuffinsMay 9, 2025
  • Sourdough Hot Dog Buns with a hot dog with ketchup and mustard on a blue platter enamelware plate with potato chips.
    Sourdough Hot Dog BunsMay 6, 2025
  • Sourdough strawberry muffins with crumb topping on a wire rack with strawberries, oats, and flowers.
    Sourdough Strawberry Muffins with Crumb ToppingApril 29, 2025
  • Sourdough focaccia on a wire rack with rosemary, olive oil, and flowers.
    Sourdough FocacciaApril 18, 2025
  • Sourdough carrot cake scone on a plate with cream cheese glaze on top and pecans, raisins, and carrots scattered around and more scones in the background on a wire rack.
    Sourdough Carrot Cake SconesApril 11, 2025
  • Sourdough lemon poppy seed muffins on a plate with dripping lemon glaze and a sliced lemon.
    Sourdough Lemon Poppy Seed MuffinsApril 4, 2025
  • Sourdough hot cross buns on a plate with currants and a sliced orange.
    Sourdough Hot Cross Buns with Brown ButterMarch 28, 2025
  • Plate with a sourdough cinanmon raisin english muffin sliced open with butter and a butter knife, cinnamon sticks, raisins, and english muffins to the side.
    Sourdough Cinnamon Raisin English MuffinsMarch 14, 2025

Menu

  • Home
  • Recipes
    • How to Make a Sourdough Starter
    • Breads
    • Sourdough Discard
    • Desserts
    • Breakfast
  • Guides
  • Tools
  • Newsletter
  • Events
  • About
    • Contact me
Black sourdough brandon logo

SourdoughBrandon.com is an independent website owned and operated by a home baker, sourdough educator, and sourdough recipe developer.

All images and content may not be used without permission.

© Sourdough Brandon Privacy

Connect with me

Picture of Brandon with Sourdough

Follow me on social media and my newsletter!

©2025 Sourdough Brandon

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required